diff --git a/snakemodules/notebooks/contig_coverage_heatmap.py.ipynb b/snakemodules/notebooks/contig_coverage_heatmap.py.ipynb index 03bd1b5f15e49d4e4c2abe35a1a663c03ce7633c..4a813c29742552ccb10534427a3c78e43bbf4566 100644 --- a/snakemodules/notebooks/contig_coverage_heatmap.py.ipynb +++ b/snakemodules/notebooks/contig_coverage_heatmap.py.ipynb @@ -160,13 +160,23 @@ }, { "cell_type": "code", - "execution_count": 91, + "execution_count": null, "id": "36f31bc9-8eaa-434a-9a81-6a97282fe469", "metadata": {}, "outputs": [], "source": [ "coverage_df.rename(columns={'#rname': 'contigs'}, inplace=True)\n", - "coverage_df.set_index('contigs', inplace=True)\n", + "coverage_df.set_index('contigs', inplace=True)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "345e2ab4", + "metadata": {}, + "outputs": [], + "source": [ + "coverage_df = coverage_df[coverage_df.index.str.startswith(\"contig_\")]\n", "coverage_df = coverage_df.reindex(order_by_length)" ] }, @@ -217,7 +227,7 @@ ], "metadata": { "kernelspec": { - "display_name": "Python 3 (ipykernel)", + "display_name": "base", "language": "python", "name": "python3" }, @@ -231,7 +241,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.12" + "version": "3.9.12" } }, "nbformat": 4,