From 14382801beb87366b0da043019c9b5e82ba1ee33 Mon Sep 17 00:00:00 2001
From: Thomas Krannich <krannich479@googlemail.com>
Date: Thu, 17 Mar 2022 11:02:54 +0100
Subject: [PATCH] fix atoi, as it's not part of gcc
---
src/popins2_merge_and_set_mate.h | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/popins2_merge_and_set_mate.h b/src/popins2_merge_and_set_mate.h
index a11587f..0af731a 100644
--- a/src/popins2_merge_and_set_mate.h
+++ b/src/popins2_merge_and_set_mate.h
@@ -1,5 +1,6 @@
#include <sstream>
#include <cerrno>
+#include <stdlib.h>
#include <seqan/file.h>
#include <seqan/sequence.h>
@@ -106,7 +107,7 @@ inline CharString iterSuffix(const CharString &PG_ID, const std::unordered_set<c
CharString inf = ".mH";
append(ret, inf);
char buffer[32];
- itoa(i, buffer, 10); // unsigned, char*, numerical base
+ snprintf(buffer, sizeof(buffer), "%d", i); // unsigned, char*, numerical base
CharString suf = buffer;
append(ret, suf);
--
GitLab