add cluster configuration for all rules, update README, remove manual input for sample names (0ace4544) · Commits · FONDA_A6 / popinSnake · GitLab

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0ace4544

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Commit 0ace4544 authored 4 months ago by

kdc715

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add cluster configuration for all rules, update README, remove manual input for sample names

parent 2eba2544

No related merge requests found

Changes 16

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.gitignore 1 addition, 0 deletions

.gitignore
README.md 96 additions, 62 deletions

README.md
Snakefile 40 additions, 28 deletions

Snakefile
config/cluster_config.yaml 53 additions, 0 deletions

config/cluster_config.yaml
config/snake_config.yaml 17 additions, 21 deletions

config/snake_config.yaml
snakemodules/analysis.smk 127 additions, 5 deletions

snakemodules/analysis.smk
snakemodules/contigmap.smk 46 additions, 15 deletions

snakemodules/contigmap.smk
snakemodules/crop_remapped.smk 44 additions, 11 deletions

snakemodules/crop_remapped.smk
snakemodules/crop_unmapped.smk 45 additions, 11 deletions

snakemodules/crop_unmapped.smk
snakemodules/download_krakendb.smk 0 additions, 16 deletions

snakemodules/download_krakendb.smk
snakemodules/genotype.smk 15 additions, 0 deletions

snakemodules/genotype.smk
snakemodules/kraken.smk 59 additions, 26 deletions

snakemodules/kraken.smk
snakemodules/merge.smk 5 additions, 2 deletions

snakemodules/merge.smk
snakemodules/minia.smk 20 additions, 8 deletions

snakemodules/minia.smk
snakemodules/position.smk 30 additions, 1 deletion

snakemodules/position.smk
snakemodules/velvet.smk 20 additions, 0 deletions

snakemodules/velvet.smk

with 618 additions and 206 deletions

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