fix analysis module, clean up jupyter notebook functions (25c4367f) · Commits · FONDA_A6 / popinSnake · GitLab

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25c4367f

Commit 25c4367f authored 6 months ago by

kdc715

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fix analysis module, clean up jupyter notebook functions

parent e04319c9

Changes 16

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.gitignore 3 additions, 0 deletions

.gitignore
Snakefile 5 additions, 4 deletions

Snakefile
modules/analysis.smk 5 additions, 5 deletions

modules/analysis.smk
modules/assemble.smk 0 additions, 73 deletions

modules/assemble.smk
modules/crop_remapped.smk 3 additions, 3 deletions

modules/crop_remapped.smk
modules/crop_unmapped.smk 7 additions, 3 deletions

modules/crop_unmapped.smk
modules/merge.smk 4 additions, 1 deletion

modules/merge.smk
modules/notebooks/content_distribution.py.ipynb 51 additions, 220 deletions

modules/notebooks/content_distribution.py.ipynb
modules/notebooks/contig_coverage_heatmap.py.ipynb 528 additions, 7907 deletions

modules/notebooks/contig_coverage_heatmap.py.ipynb
modules/notebooks/read_numbers_in_bar_graph.py.ipynb 38 additions, 17 deletions

modules/notebooks/read_numbers_in_bar_graph.py.ipynb
modules/notebooks/remapped_comparison_053122.ipynb 0 additions, 111 deletions

modules/notebooks/remapped_comparison_053122.ipynb
modules/notebooks/sample_analysis_table.py.ipynb 55 additions, 61 deletions

modules/notebooks/sample_analysis_table.py.ipynb
modules/notebooks/src/stat_func/calculator.py 254 additions, 6 deletions

modules/notebooks/src/stat_func/calculator.py
modules/notebooks/src/stat_func/visualization.py 24 additions, 10 deletions

modules/notebooks/src/stat_func/visualization.py
modules/position.smk 5 additions, 6 deletions

modules/position.smk
snake_config.yaml 4 additions, 4 deletions

snake_config.yaml

with 986 additions and 8431 deletions

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