use samtools to calculate contig coverage and change notebook for heatmap visualization (71d33b17) · Commits · FONDA_A6 / popinSnake · GitLab

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71d33b17

Commit 71d33b17 authored 6 months ago by

kdc715

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use samtools to calculate contig coverage and change notebook for heatmap visualization

parent e004f263

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Changes 10

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.gitignore 1 addition, 0 deletions

.gitignore
Snakefile 0 additions, 1 deletion

Snakefile
modules/analysis.smk 19 additions, 3 deletions

modules/analysis.smk
modules/contigmap.smk 17 additions, 1 deletion

modules/contigmap.smk
modules/crop_remapped.smk 3 additions, 3 deletions

modules/crop_remapped.smk
modules/crop_unmapped.smk 3 additions, 6 deletions

modules/crop_unmapped.smk
modules/merge.smk 3 additions, 3 deletions

modules/merge.smk
modules/notebooks/contig_coverage_heatmap.py.ipynb 72 additions, 501 deletions

modules/notebooks/contig_coverage_heatmap.py.ipynb
modules/position.smk 7 additions, 4 deletions

modules/position.smk
snake_config.yaml 1 addition, 1 deletion

snake_config.yaml

with 126 additions and 523 deletions

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