fixing filepaths for conda environment paths, notebook paths, and notebook inputs
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- snakemodules/analysis.smk 54 additions, 29 deletionssnakemodules/analysis.smk
- snakemodules/contigmap.smk 7 additions, 8 deletionssnakemodules/contigmap.smk
- snakemodules/crop_remapped.smk 4 additions, 2 deletionssnakemodules/crop_remapped.smk
- snakemodules/crop_unmapped.smk 3 additions, 2 deletionssnakemodules/crop_unmapped.smk
- snakemodules/genotype.smk 3 additions, 2 deletionssnakemodules/genotype.smk
- snakemodules/kraken.smk 7 additions, 7 deletionssnakemodules/kraken.smk
- snakemodules/minia.smk 5 additions, 4 deletionssnakemodules/minia.smk
- snakemodules/notebooks/content_distribution.py.ipynb 1 addition, 4 deletionssnakemodules/notebooks/content_distribution.py.ipynb
- snakemodules/notebooks/contig_coverage_heatmap.py.ipynb 1 addition, 1 deletionsnakemodules/notebooks/contig_coverage_heatmap.py.ipynb
- snakemodules/notebooks/read_numbers_in_bar_graph.py.ipynb 5 additions, 4 deletionssnakemodules/notebooks/read_numbers_in_bar_graph.py.ipynb
- snakemodules/notebooks/sample_analysis_table.py.ipynb 1 addition, 1 deletionsnakemodules/notebooks/sample_analysis_table.py.ipynb
- snakemodules/notebooks/src/stat_func/__pycache__/__init__.cpython-312.pyc 0 additions, 0 deletions...ebooks/src/stat_func/__pycache__/__init__.cpython-312.pyc
- snakemodules/notebooks/src/stat_func/__pycache__/calculator.cpython-312.pyc 0 additions, 0 deletions...ooks/src/stat_func/__pycache__/calculator.cpython-312.pyc
- snakemodules/notebooks/src/stat_func/__pycache__/visualization.cpython-312.pyc 0 additions, 0 deletions...s/src/stat_func/__pycache__/visualization.cpython-312.pyc
- snakemodules/notebooks/src/stat_func/calculator.py 0 additions, 0 deletionssnakemodules/notebooks/src/stat_func/calculator.py
- snakemodules/notebooks/src/stat_func/visualization.py 0 additions, 0 deletionssnakemodules/notebooks/src/stat_func/visualization.py
- snakemodules/velvet.smk 5 additions, 4 deletionssnakemodules/velvet.smk
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