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Commit ced99c46 authored by kdc715's avatar kdc715
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fix file path for python script

parent 1338cbbf
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import os
rule kraken_map: rule kraken_map:
input: input:
...@@ -57,7 +58,7 @@ rule obtain_classified_human_reads: ...@@ -57,7 +58,7 @@ rule obtain_classified_human_reads:
single_fq = rules.kraken_map.output.c_single, single_fq = rules.kraken_map.output.c_single,
paired_fq1 = rules.kraken_map.output.c_paired_1, paired_fq1 = rules.kraken_map.output.c_paired_1,
paired_fq2 = rules.kraken_map.output.c_paired_2, paired_fq2 = rules.kraken_map.output.c_paired_2,
script= WORKFLOW_PATH + config["python_script"] script= os.path.join(WORKFLOW_PATH,config["python_script"])
output: output:
hc_single = WORK_DIR + "/{sample}/contaminate_info/human_classified_single.fastq", hc_single = WORK_DIR + "/{sample}/contaminate_info/human_classified_single.fastq",
hc_paired_1 = WORK_DIR + "/{sample}/contaminate_info/human_classified_paired_1.fastq", hc_paired_1 = WORK_DIR + "/{sample}/contaminate_info/human_classified_paired_1.fastq",
......
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