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workflow can either automatically detect sample
s from input_dir or analyze only provided samples from the config file;conda default channel deprecated;add logging for python script
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- Snakefile 18 additions, 6 deletionsSnakefile
- config/snake_config.yaml 86 additions, 79 deletionsconfig/snake_config.yaml
- snakemodules/contigmap.smk 4 additions, 4 deletionssnakemodules/contigmap.smk
- snakemodules/envs/biopython.yml 0 additions, 1 deletionsnakemodules/envs/biopython.yml
- snakemodules/envs/samtools21.yml 0 additions, 1 deletionsnakemodules/envs/samtools21.yml
- snakemodules/merge.smk 0 additions, 8 deletionssnakemodules/merge.smk
- snakemodules/scripts/remap_classified_human.py 39 additions, 37 deletionssnakemodules/scripts/remap_classified_human.py
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