Cleaning unused PopIns2 leftovers from popins4snake code.
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- Makefile 4 additions, 8 deletionsMakefile
- external/gatb-minia-pipeline/.gitignore 0 additions, 3 deletionsexternal/gatb-minia-pipeline/.gitignore
- external/gatb-minia-pipeline/.gitmodules 0 additions, 3 deletionsexternal/gatb-minia-pipeline/.gitmodules
- external/gatb-minia-pipeline/BESST/BESST/Contig.py 0 additions, 38 deletionsexternal/gatb-minia-pipeline/BESST/BESST/Contig.py
- external/gatb-minia-pipeline/BESST/BESST/CreateGraph.py 0 additions, 847 deletionsexternal/gatb-minia-pipeline/BESST/BESST/CreateGraph.py
- external/gatb-minia-pipeline/BESST/BESST/ExtendLargeScaffolds.py 0 additions, 441 deletions...l/gatb-minia-pipeline/BESST/BESST/ExtendLargeScaffolds.py
- external/gatb-minia-pipeline/BESST/BESST/GenerateOutput.py 0 additions, 178 deletionsexternal/gatb-minia-pipeline/BESST/BESST/GenerateOutput.py
- external/gatb-minia-pipeline/BESST/BESST/MakeScaffolds.py 0 additions, 1706 deletionsexternal/gatb-minia-pipeline/BESST/BESST/MakeScaffolds.py
- external/gatb-minia-pipeline/BESST/BESST/Parameter.py 0 additions, 127 deletionsexternal/gatb-minia-pipeline/BESST/BESST/Parameter.py
- external/gatb-minia-pipeline/BESST/BESST/Scaffold.py 0 additions, 38 deletionsexternal/gatb-minia-pipeline/BESST/BESST/Scaffold.py
- external/gatb-minia-pipeline/BESST/BESST/bam_parser.py 0 additions, 205 deletionsexternal/gatb-minia-pipeline/BESST/BESST/bam_parser.py
- external/gatb-minia-pipeline/BESST/BESST/decide_approach.py 0 additions, 24 deletionsexternal/gatb-minia-pipeline/BESST/BESST/decide_approach.py
- external/gatb-minia-pipeline/BESST/BESST/diploid/__init__.py 0 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/diploid/__init__.py
- external/gatb-minia-pipeline/BESST/BESST/diploid/get_haplotype_regions.py 0 additions, 356 deletions...nia-pipeline/BESST/BESST/diploid/get_haplotype_regions.py
- external/gatb-minia-pipeline/BESST/BESST/diploid/lib/swmodule 0 additions, 0 deletions...rnal/gatb-minia-pipeline/BESST/BESST/diploid/lib/swmodule
- external/gatb-minia-pipeline/BESST/BESST/diploid/lib/swmodule.cpp 0 additions, 340 deletions.../gatb-minia-pipeline/BESST/BESST/diploid/lib/swmodule.cpp
- external/gatb-minia-pipeline/BESST/BESST/diploid/output_contigs.py 0 additions, 229 deletions...gatb-minia-pipeline/BESST/BESST/diploid/output_contigs.py
- external/gatb-minia-pipeline/BESST/BESST/diploid/remap_to_contigs.py 0 additions, 5 deletions...tb-minia-pipeline/BESST/BESST/diploid/remap_to_contigs.py
- external/gatb-minia-pipeline/BESST/BESST/diploid/smith_waterman.py 0 additions, 107 deletions...gatb-minia-pipeline/BESST/BESST/diploid/smith_waterman.py
- external/gatb-minia-pipeline/BESST/BESST/diploid/wrapper_sw.py 0 additions, 28 deletions...nal/gatb-minia-pipeline/BESST/BESST/diploid/wrapper_sw.py
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