update popins2 for snakemake
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- LICENSE 339 additions, 0 deletionsLICENSE
- Makefile 60 additions, 0 deletionsMakefile
- README.md 160 additions, 1 deletionREADME.md
- build/ColoredDeBruijnGraph.o 0 additions, 0 deletionsbuild/ColoredDeBruijnGraph.o
- build/LECC_Finder.o 0 additions, 0 deletionsbuild/LECC_Finder.o
- build/Setcover.o 0 additions, 0 deletionsbuild/Setcover.o
- build/Traceback.o 0 additions, 0 deletionsbuild/Traceback.o
- build/UnitigExtension.o 0 additions, 0 deletionsbuild/UnitigExtension.o
- build/popins2.o 0 additions, 0 deletionsbuild/popins2.o
- external/gatb-minia-pipeline/.gitignore 3 additions, 0 deletionsexternal/gatb-minia-pipeline/.gitignore
- external/gatb-minia-pipeline/.gitmodules 3 additions, 0 deletionsexternal/gatb-minia-pipeline/.gitmodules
- external/gatb-minia-pipeline/BESST/BESST/Contig.py 38 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/Contig.py
- external/gatb-minia-pipeline/BESST/BESST/CreateGraph.py 847 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/CreateGraph.py
- external/gatb-minia-pipeline/BESST/BESST/ExtendLargeScaffolds.py 441 additions, 0 deletions...l/gatb-minia-pipeline/BESST/BESST/ExtendLargeScaffolds.py
- external/gatb-minia-pipeline/BESST/BESST/GenerateOutput.py 178 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/GenerateOutput.py
- external/gatb-minia-pipeline/BESST/BESST/MakeScaffolds.py 1706 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/MakeScaffolds.py
- external/gatb-minia-pipeline/BESST/BESST/Parameter.py 127 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/Parameter.py
- external/gatb-minia-pipeline/BESST/BESST/Scaffold.py 38 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/Scaffold.py
- external/gatb-minia-pipeline/BESST/BESST/__init__.py 0 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/__init__.py
- external/gatb-minia-pipeline/BESST/BESST/bam_parser.py 205 additions, 0 deletionsexternal/gatb-minia-pipeline/BESST/BESST/bam_parser.py
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