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Commit a5062978 authored by kdc715's avatar kdc715
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fix resources for dynamic scheduling

parent ced99c46
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snakemodules/crop_remapped.smk
+ 2
− 2
View file @ a5062978
...@@ -30,7 +30,7 @@ if config["SICKLE"]=="no": ...@@ -30,7 +30,7 @@ if config["SICKLE"]=="no":
q = config["min-qual"], q = config["min-qual"],
l = config["min-read-len"] l = config["min-read-len"]
resources: resources:
mem_mb = lambda wildcards, attempt: config["dynamic_schedule"]["mem_init"]* (2** (attempt - 1)), mem_mb = lambda wildcards, attempt: resources["dynamic_schedule"]["mem_init"]* (2** (attempt - 1)),
# mem_mb = resources["standard_4G"]["mem"], # mem_mb = resources["standard_4G"]["mem"],
time = resources["standard_4G"]["time"] time = resources["standard_4G"]["time"]
threads: threads:
...@@ -82,7 +82,7 @@ elif config["SICKLE"]=="yes": ...@@ -82,7 +82,7 @@ elif config["SICKLE"]=="yes":
q = config["min-qual"], q = config["min-qual"],
l = config["min-read-len"] l = config["min-read-len"]
resources: resources:
mem_mb = lambda wildcards, attempt: config["dynamic_schedule"]["mem_init"]* (2** (attempt - 1)), mem_mb = lambda wildcards, attempt: resources["dynamic_schedule"]["mem_init"]* (2** (attempt - 1)),
# mem_mb = resources["standard_4G"]["mem"], # mem_mb = resources["standard_4G"]["mem"],
time = resources["standard_4G"]["time"] time = resources["standard_4G"]["time"]
threads: threads:
......
snakemodules/crop_unmapped.smk
+ 2
− 2
View file @ a5062978
...@@ -29,7 +29,7 @@ if config["SICKLE"]=="no": ...@@ -29,7 +29,7 @@ if config["SICKLE"]=="no":
q = config["min-qual"], q = config["min-qual"],
l = config["min-read-len"] l = config["min-read-len"]
resources: resources:
mem_mb = lambda wildcards, attempt: config["dynamic_schedule"]["mem_init"]* (2** (attempt - 1)), mem_mb = lambda wildcards, attempt: resources["dynamic_schedule"]["mem_init"]* (2** (attempt - 1)),
# mem_mb = resources["standard_4G"]["mem"], # mem_mb = resources["standard_4G"]["mem"],
time = resources["standard_4G"]["time"] time = resources["standard_4G"]["time"]
threads: threads:
...@@ -81,7 +81,7 @@ elif config["SICKLE"]=="yes": ...@@ -81,7 +81,7 @@ elif config["SICKLE"]=="yes":
q = config["min-qual"], q = config["min-qual"],
l = config["min-read-len"] l = config["min-read-len"]
resources: resources:
mem_mb = lambda wildcards, attempt: config["dynamic_schedule"]["mem_init"]* (2** (attempt - 1)), mem_mb = lambda wildcards, attempt: resources["dynamic_schedule"]["mem_init"]* (2** (attempt - 1)),
# mem_mb = resources["standard_4G"]["mem"], # mem_mb = resources["standard_4G"]["mem"],
time = resources["standard_4G"]["time"] time = resources["standard_4G"]["time"]
threads: threads:
......
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