modify coverage calculation method, add analysis for comparing popins filter params and sickle (b0bf1af4) · Commits · FONDA_A6 / popinSnake · GitLab

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b0bf1af4

Commit b0bf1af4 authored 6 months ago by

kdc715

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modify coverage calculation method, add analysis for comparing popins filter params and sickle

parent 71d33b17

Changes 9

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Snakefile 11 additions, 8 deletions

Snakefile
modules/analysis.smk 118 additions, 33 deletions

modules/analysis.smk
modules/contigmap.smk 1 addition, 17 deletions

modules/contigmap.smk
modules/crop_remapped.smk 2 additions, 2 deletions

modules/crop_remapped.smk
modules/crop_unmapped.smk 2 additions, 2 deletions

modules/crop_unmapped.smk
modules/genotype.smk 2 additions, 7 deletions

modules/genotype.smk
modules/notebooks/contig_coverage_heatmap.py.ipynb 14 additions, 35 deletions

modules/notebooks/contig_coverage_heatmap.py.ipynb
modules/notebooks/src/stat_func/calculator.py 33 additions, 0 deletions

modules/notebooks/src/stat_func/calculator.py
modules/position.smk 0 additions, 8 deletions

modules/position.smk

with 183 additions and 112 deletions

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