ba423edc · save coverage analysis files for re-creating heatmaps

97c1d2de · add environment for creating plotly figures

52bda0f6 · save distribution analysis

32c4aa8e · change .png extensions to .pdf, add empty samples list in config

ccd96b4c · clear notebook output

0b5ebc9d · re-arrange rules

0edb88a1 · save notebook analysis in .txt and .pdf format

359d9416 · Update README.md

19c10d7d · Update README.md

e38b3046 · Update README.md

e03b0e22 · workflow can either automatically detect sample

c73480d7 · Update README.md

5fd40868 · Update README.md

a9b9b96d · Update README.md

3631fcbf · fix analysis after contamination removal

40d3d502 · remove temporary files from rule_all, add input files missing for g...

49083683 · add more temporary files to be removed when workflow finish

4dcf79b4 · remove chromosome info from coverage analysis, only keep contigs

f30daff1 · samtools multithreading scheduling fix

021311d9 · fix memory allocation for samtool multithreading rules